Publications

2024

  • Andreev V, Arratia M, Baghdasaryan A, Baty A, Begzsuren K, Bolz A, et al.
    Measurement of the 1-jettiness event shape observable in deep-inelastic electron-proton scattering at HERA
    European Physical Journal C: Particles and Fields. 2024; 84(8): 785 (42 pp.). https://doi.org/10.1140/epjc/s10052-024-13115-8
    DORA PSI
  • Andreev V, Arratia M, Baghdasaryan A, Baty A, Begzsuren K, Bolz A, et al.
    Observation and differential cross section measurement of neutral current DIS events with an empty hemisphere in the Breit frame
    European Physical Journal C: Particles and Fields. 2024; 84(7): 720 (11 pp.). https://doi.org/10.1140/epjc/s10052-024-13003-1
    DORA PSI
  • Appel C, Aliyah K, Lazaridis T, Prehal C, Ammann M, Xu L, et al.
    Operando scanning small-/wide-angle X-ray scattering for polymer electrolyte fuel cells: investigation of catalyst layer saturation and membrane hydration- capabilities and challenges
    ACS Applied Materials and Interfaces. 2024; 16: 25938-25952. https://doi.org/10.1021/acsami.3c11173
    DORA PSI
  • Banerjee A, Jay RM, Leitner T, Wang RP, Harich J, Stefanuik R, et al.
    Accessing metal-specific orbital interactions in C-H activation with resonant inelastic X-ray scattering
    Chemical Science. 2024; 15(7): 2398-2409. https://doi.org/10.1039/d3sc04388f
    DORA PSI
  • Barends TRM, Gorel A, Bhattacharyya S, Schirò G, Bacellar C, Cirelli C, et al.
    Influence of pump laser fluence on ultrafast myoglobin structural dynamics
    Nature. 2024; 626(8000): 905-911. https://doi.org/10.1038/s41586-024-07032-9
    DORA PSI
  • Bertrand Q, Nogly P, Nango E, Kekilli D, Khusainov G, Furrer A, et al.
    Structural effects of high laser power densities on an early bacteriorhodopsin photocycle intermediate
    Nature Communications. 2024; 15: 10278 (11 pp.). https://doi.org/10.1038/s41467-024-54422-8
    DORA PSI
  • Błachucki W, Johnson PJM, Usov I, Divall E, Cirelli C, Knopp G, et al.
    Correlation of refractive index based and THz streaking arrival time tools for a hard X-ray free-electron laser
    Journal of Synchrotron Radiation. 2024; 31(Pt 2): 233-242. https://doi.org/10.1107/S1600577523010500
    DORA PSI
  • Carlsen M, Appel C, Hearn W, Olsson M, Menzel A, Liebi M
    X-ray tensor tomography for small-grained polycrystals with strong texture
    Journal of Applied Crystallography. 2024; 57(Pt 4): 986-1000. https://doi.org/10.1107/S1600576724004588
    DORA PSI
  • Cellini A, Shankar MK, Nimmrich A, Hunt LA, Monrroy L, Mutisya J, et al.
    Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography
    Nature Chemistry. 2024; 16: 624-632. https://doi.org/10.1038/s41557-023-01413-9
    DORA PSI
  • Gao Z, Appel C, Holler M, Jeschonek K, Brunnengräber K, Etzold BJM, et al.
    Dynamic sparse x-ray nanotomography reveals ionomer hydration mechanism in polymer electrolyte fuel-cell catalyst
    Science Advances. 2024; 10(41): eadp3346 (14 pp.). https://doi.org/10.1126/sciadv.adp3346
    DORA PSI
  • Gasparotto P, Barba L, Stadler HC, Assmann G, Mendonça H, Ashton AW, et al.
    TORO Indexer: a PyTorch-based indexing algorithm for kilohertz serial crystallography
    Journal of Applied Crystallography. 2024; 57(4): 931-944. https://doi.org/10.1107/S1600576724003182
    DORA PSI
  • Gotthard G, Mous S, Weinert T, Maia RNA, James D, Dworkowski F, et al.
    Capturing the blue-light activated state of the Phot-LOV1 domain from Chlamydomonas reinhardtii using time-resolved serial synchrotron crystallography
    IUCrJ. 2024; 11(5): (17 pp.). https://doi.org/10.1107/S2052252524005608
    DORA PSI
  • Kittel C, Sarracini A, Augustin S, Yang N, Al Haddad A, Ferrari E, et al.
    Demonstration of full polarization control of soft X-ray pulses with Apple X undulators at SwissFEL using recoil ion momentum spectroscopy
    Journal of Synchrotron Radiation. 2024; 31(Pt 5): 1134-1145. https://doi.org/10.1107/S1600577524006325
    DORA PSI
  • Krupnik L, Avaro J, Liebi M, Anaraki NI, Kohlbrecher J, Sologubenko A, et al.
    Iron-carbohydrate complexes treating iron anaemia: understanding the nano-structure and interactions with proteins through orthogonal characterisation
    Journal of Controlled Release. 2024; 368: 566-579. https://doi.org/10.1016/j.jconrel.2024.02.044
    DORA PSI
  • Lautizi G, Studer A, Zdora MC, De Marco F, Kim J, Di Trapani V, et al.
    Universal reconstruction method for x-ray scattering tensor tomography based on wavefront modulation
    Physical Review Applied. 2024; 22(2): 024031 (7 pp.). https://doi.org/10.1103/PhysRevApplied.22.024031
    DORA PSI
  • Mohelsky I, Wyzula J, Le Mardelé F, Abadizaman F, Caha O, Dubroka A, et al.
    Electronic band structure of Sb2Te3
    Physical Review B. 2024; 109(16): 165205 (11 pp.). https://doi.org/10.1103/PhysRevB.109.165205
    DORA PSI
  • Nygård K, McDonald SA, González JB, Haghighat V, Appel C, Larsson E, et al.
    ForMAX – a beamline for multiscale and multimodal structural characterization of hierarchical materials
    Journal of Synchrotron Radiation. 2024; 31(Pt 2): 363-377. https://doi.org/10.1107/S1600577524001048
    DORA PSI
  • Sharma K, Silva Barreto I, Dejea H, Hammerman M, Appel C, Geraki K, et al.
    Elemental and structural characterization of heterotopic ossification during Achilles tendon healing provides new insights on the formation process
    ACS Biomaterials Science & Engineering. 2024; 10(8): 4938-4946. https://doi.org/10.1021/acsbiomaterials.4c00935
    DORA PSI
  • Viljanen M, Appel C, Larsson E, Prajapati A, Fernandez Bordín SP, Asimakopoulou EM, et al.
    Zooming into hierarchical materials by combined microtomographic and scattering-based imaging
    Synchrotron Radiation News. 2024. https://doi.org/10.1080/08940886.2024.2414720
    DORA PSI
  • Weber CC, De Angelis S, Meinert R, Appel C, Holler M, Guizar-Sicairos M, et al.
    Microporous transport layers facilitating low iridium loadings in polymer electrolyte water electrolysis
    EES Catalysis. 2024; 2(2): 585-602. https://doi.org/10.1039/d3ey00279a
    DORA PSI

2023

  • Andreev V, Arratia M, Baghdasaryan A, Baty A, Begzsuren K, Bolz A, et al.
    Unbinned deep learning jet substructure measurement in high Q2 ep collisions at HERA
    Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics. 2023; 844: 138101 (21 pp.). https://doi.org/10.1016/j.physletb.2023.138101
    DORA PSI
  • Ashton AW, Zimoch E, Yao X (M), Fries S, Braun H-H
    The controls and science IT project for the SLS 2.0 upgrade
    In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:1616-1619. https://doi.org/10.18429/JACoW-ICALEPCS2023-FR1BCO04
    DORA PSI
  • Bacellar C, Rouxel JR, Ingle RA, Mancini GF, Kinschel D, Cannelli O, et al.
    Ultrafast energy transfer from photoexcited tryptophan to the haem in cytochrome c
    Journal of Physical Chemistry Letters. 2023; 14(9): 2425-2432. https://doi.org/10.1021/acs.jpclett.3c00218
    DORA PSI
  • Błachucki W, Johnson PJM, Usov I, Arrell C
    Complexities in calibration of THz streaking based photoelectron arrival time tool at X-ray free electron lasers
    In: Conference on lasers and electro-optics (CLEO). Red Hook: Institute of Electrical and Electronics Engineers; 2023:JW2A.7 (2 pp.). https://doi.org/10.1364/CLEO_AT.2023.JW2A.7
    DORA PSI
  • Casadei CM, Hosseinizadeh A, Bliven S, Weinert T, Standfuss J, Fung R, et al.
    Low-pass spectral analysis of time-resolved serial femtosecond crystallography data
    Structural Dynamics. 2023; 10(3): 034101 (18 pp.). https://doi.org/10.1063/4.0000178
    DORA PSI
  • Christou N-E, Apostolopoulou V, Melo DVM, Ruppert M, Fadini A, Henkel A, et al.
    Time-resolved crystallography captures light-driven DNA repair
    Science. 2023; 382(6674): 1015-1020. https://doi.org/10.1126/science.adj4270
    DORA PSI
  • Gruhl T, Weinert T, Rodrigues MJ, Milne CJ, Ortolani G, Nass K, et al.
    Ultrafast structural changes direct the first molecular events of vision
    Nature. 2023; 615: 939-944. https://doi.org/10.1038/s41586-023-05863-6
    DORA PSI
  • Jay RM, Banerjee A, Leitner T, Wang R-P, Harich J, Stefanuik R, et al.
    Tracking C-H activation with orbital resolution
    Science. 2023; 380(6648): 955-960. https://doi.org/10.1126/science.adf8042
    DORA PSI
  • Kotobi A, Schwob L, Vonbun-Feldbauer GB, Rossi M, Gasparotto P, Feiler C, et al.
    Reconstructing the infrared spectrum of a peptide from representative conformers of the full canonical ensemble
    Communications Chemistry. 2023; 6(1): 46 (10 pp.). https://doi.org/10.1038/s42004-023-00835-3
    DORA PSI
  • Leonarski F, Brückner M, Lopez-Cuenca C, Mozzanica A, Stadler H-C, Matěj Z, et al.
    Jungfraujoch: hardware-accelerated data-acquisition system for kilohertz pixel-array X-ray detectors
    Journal of Synchrotron Radiation. 2023; 30: 227-234. https://doi.org/10.1107/S1600577522010268
    DORA PSI
  • Leonarski F, Nan J, Matej Z, Bertrand Q, Furrer A, Gorgisyan I, et al.
    Kilohertz serial crystallography with the JUNGFRAU detector at a fourth-generation synchrotron source
    IUCrJ. 2023; 10(6): 729-737. https://doi.org/10.1107/S2052252523008618
    DORA PSI
  • Maestre-Reyna M, Wang P-H, Nango E, Hosokawa Y, Saft M, Furrer A, et al.
    Visualizing the DNA repair process by a photolyase at atomic resolution
    Science. 2023; 382(6674): eadd7795 (14 pp.). https://doi.org/10.1126/science.add7795
    DORA PSI
  • Milne CJ, Nagornova N, Pope T, Chen HY, Rossi T, Szlachetko J, et al.
    Disentangling the evolution of electrons and holes in photoexcited ZnO nanoparticles
    Structural Dynamics. 2023; 10(6): 064501 (9 pp.). https://doi.org/10.1063/4.0000204
    DORA PSI
  • Minotti C, Ashton A, Bliven S
    Enhancing data management with SciCat: a comprehensive overview of a metadata catalogue for research infrastructures
    In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:1195-1200. https://doi.org/10.18429/JACoW-ICALEPCS2023-THMBCMO02
    DORA PSI
  • Prat E, Al Haddad A, Arrell C, Augustin S, Boll M, Bostedt C, et al.
    An X-ray free-electron laser with a highly configurable undulator and integrated chicanes for tailored pulse properties
    Nature Communications. 2023; 14: 5069 (11 pp.). https://doi.org/10.1038/s41467-023-40759-z
    DORA PSI
  • Schnorr K, Belina M, Augustin S, Lindenblatt H, Liu Y, Meister S, et al.
    Direct tracking of ultrafast proton transfer in water dimers
    Science Advances. 2023; 9(28): eadg7864 (9 pp.). https://doi.org/10.1126/sciadv.adg7864
    DORA PSI
  • Tsolaki E, Corso P, Zboray R, Avaro J, Appel C, Liebi M, et al.
    Multiscale multimodal characterization and simulation of structural alterations in failed bioprosthetic heart valves
    Acta Biomaterialia. 2023; 169: 138-154. https://doi.org/10.1016/j.actbio.2023.07.044
    DORA PSI
  • Wakonig K, Appel C, Ashton A, Augustin S, Holler M, Usov I, et al.
    A beamline and experiment control system for SLS 2.0
    In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:71-77. https://doi.org/10.18429/JACoW-ICALEPCS2023-MO2AO02
    DORA PSI
  • Wakonig K, Ashton A, Minotti C
    SciLog: a flexible logbook system for experiment data management
    In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:1512-1515. https://doi.org/10.18429/JACoW-ICALEPCS2023-THPDP073
    DORA PSI
  • Wranik M, Kepa MW, Beale EV, James D, Bertrand Q, Weinert T, et al.
    A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers
    Nature Communications. 2023; 14(1): 7956 (12 pp.). https://doi.org/10.1038/s41467-023-43523-5
    DORA PSI
  • Wranik M, Weinert T, Slavov C, Masini T, Furrer A, Gaillard N, et al.
    Watching the release of a photopharmacological drug from tubulin using time-resolved serial crystallography
    Nature Communications. 2023; 14(1): 903 (12 pp.). https://doi.org/10.1038/s41467-023-36481-5
    DORA PSI

2022

  • Abt I, Aggarwal R, Andreev V, Arratia M, Aushev V, Baghdasaryan A, et al.
    Impact of jet-production data on the next-to-next-to-leading-order determination of HERAPDF2.0 parton distributions
    European Physical Journal C: Particles and Fields. 2022; 82(3): 243 (33 pp.). https://doi.org/10.1140/epjc/s10052-022-10083-9
    DORA PSI
  • Andreev V, Arratia M, Baghdasaryan A, Baty A, Begzsuren K, Belousov A, et al.
    Measurement of lepton-jet correlation in deep-inelastic scattering with the H1 detector using machine learning for unfolding
    Physical Review Letters. 2022; 128(13): 132002 (9 pp.). https://doi.org/10.1103/PhysRevLett.128.132002
    DORA PSI
  • Båth P, Banacore A, Börjesson P, Bosman R, Wickstrand C, Safari C, et al.
    Lipidic cubic phase serial femtosecond crystallography structure of a photosynthetic reaction centre
    Acta Crystallographica Section D: Structural Biology. 2022; 78(6): 698-708. https://doi.org/10.1107/S2059798322004144
    DORA PSI
  • Gasparotto P, Fitzner M, Cox SJ, Sosso GC, Michaelides A
    How do interfaces alter the dynamics of supercooled water?
    Nanoscale. 2022; 14(11): 4254-4262. https://doi.org/10.1039/d2nr00387b
    DORA PSI
  • Giorgianni F, Burian M, Gurung N, Kubli M, Esposito V, Staub U, et al.
    Melting of magnetic order in NaOsO3 by femtosecond laser pulses
    Physical Review B. 2022; 105: 155147 (9 pp.). https://doi.org/10.1103/PhysRevB.105.155147
    DORA PSI
  • Grimes M, Ueda H, Ozerov D, Pressacco F, Parchenko S, Apseros A, et al.
    Determination of sub-ps lattice dynamics in FeRh thin films
    Scientific Reports. 2022; 12: 8584 (11 pp.). https://doi.org/10.1038/s41598-022-12602-w
    DORA PSI
  • Hinger V, al Haddad A, Barten R, Bergamaschi A, Brückner M, Carulla M, et al.
    Advancing the JUNGFRAU detector toward low-energy X-ray applications
    Journal of Instrumentation. 2022; 17(9): C09027 (7 pp.). https://doi.org/10.1088/1748-0221/17/09/C09027
    DORA PSI
  • Jay RM, Banerjee A, Leitner T, Stefanuik R, Wang R-P, Harich J, et al.
    From femtosecond excited-state and dissociation dynamics to nanosecond reaction kinetics: following C-H bond activation with X-rays
    In: Proceedings the international conference on ultrafast phenomena (UP) 2022. International conference on ultrafast phenomena. Optica Publishing Group; 2022:(2 pp.). https://doi.org/10.1364/UP.2022.Tu1A.2
    DORA PSI
  • Kepa MW, Tomizaki T, Sato Y, Ozerov D, Sekiguchi H, Yasuda N, et al.
    Acoustic levitation and rotation of thin films and their application for room temperature protein crystallography
    Scientific Reports. 2022; 12: 5349 (14 pp.). https://doi.org/10.1038/s41598-022-09167-z
    DORA PSI
  • Mous S, Gotthard G, Ehrenberg D, Sen S, Weinert T, Johnson PJM, et al.
    Dynamics and mechanism of a light-driven chloride pump
    Science. 2022; 375(6583): 845-851. https://doi.org/10.1126/science.abj6663
    DORA PSI
  • Prat E, Dijkstal P, Ferrari E, Ganter R, Juranić P, Malyzhenkov A, et al.
    Widely tunable two-color x-ray free-electron laser pulses
    Physical Review Research. 2022; 4(2): L022025 (6 pp.). https://doi.org/10.1103/PhysRevResearch.4.L022025
    DORA PSI
  • Sun Z, Al Haddad A, Augustin S, Knopp G, Knurr J, Schnorr K, et al.
    Ultrafast single-particle imaging with intense X-ray pulses
    Chimia. 2022; 76(6): 529-537. https://doi.org/10.2533/chimia.2022.529
    DORA PSI
  • Willmott PR, Aeppli G, Ashton A, Bostedt C, Bunk O, Calvi M, et al.
    The Swiss Light Source upgrade to a diffraction-limited storage ring
    Swiss Soc. for Phot. Sci. Newsletter. 2022:1-11.
    DORA PSI

2021

  • Ashton A, Augustin S, Babic A, Celcer T, Ebner SG, Egli S, et al.
    Conceptual design report on controls and science IT for the SLS 2.0 upgrade project
    Villigen PSI, Switzerland: Paul Scherrer Institut; 2021. PSI Bericht: 21-03.
    DORA PSI
  • Braun H, Garvey T, Jörg M, Ashton A, Willmott P, Kobler R, et al.
    SLS 2.0 storage ring. Technical design report
    Villigen PSI, Switzerland: Paul Scherrer Institut; 2021. PSI Bericht: 21-02.
    DORA PSI
  • Calvo P, Podadera I, Gavela D, Oliver C, Adelmann A, Snuverink J, et al.
    Beam stripping interactions in compact cyclotrons
    Physical Review Accelerators and Beams. 2021; 24(9): 090101 (11 pp.). https://doi.org/10.1103/PhysRevAccelBeams.24.090101
    DORA PSI
  • Delucchi M, Näf P, Bliven S, Anisimova M
    TRAL 2.0: tandem repeat detection with circular profile hidden markov models and evolutionary aligner
    Frontiers in Bioinformatics. 2021; 1: 691865 (6 pp.). https://doi.org/10.3389/fbinf.2021.691865
    DORA PSI
  • Ihli J, Schenk AS, Rosenfeldt S, Wakonig K, Holler M, Falini G, et al.
    Mechanical adaptation of brachiopod shells via hydration-induced structural changes
    Nature Communications. 2021; 12(1): 5383 (12 pp.). https://doi.org/10.1038/s41467-021-25613-4
    DORA PSI
  • Keable SM, Kölsch A, Simon PS, Dasgupta M, Chatterjee R, Subramanian SK, et al.
    Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I
    Scientific Reports. 2021; 11: 21787 (14 pp.). https://doi.org/10.1038/s41598-021-00236-3
    DORA PSI
  • Meister S, Bondy A, Schnorr K, Augustin S, Lindenblatt H, Trost F, et al.
    Linear dichroism in few-photon ionization of laser-dressed helium
    European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics. 2021; 75(7): 205 (11 pp.). https://doi.org/10.1140/epjd/s10053-021-00218-0
    DORA PSI
  • Nass K, Bacellar C, Cirelli C, Dworkowski F, Gevorkov Y, James D, et al.
    Pink-beam serial femtosecond crystallography for accurate structure-factor determination at an X-ray free-electron laser
    IUCrJ. 2021; 8: 905-920. https://doi.org/10.1107/S2052252521008046
    DORA PSI
  • Rodriguez-Fernandez A, Diaz A, Iyer AHS, Verezhak M, Wakonig K, Colliander MH, et al.
    Imaging ultrafast dynamical diffraction wave fronts in strained Si with coherent X rays
    Physical Review Letters. 2021; 127(15): 157402 (7 pp.). https://doi.org/10.1103/PhysRevLett.127.157402
    DORA PSI
  • Schotsch F, Zebergs I, Augustin S, Lindenblatt H, Hoibl L, Djendjur D, et al.
    TrapREMI: a reaction microscope inside an electrostatic ion beam trap
    Review of Scientific Instruments. 2021; 92(12): 123201 (12 pp.). https://doi.org/10.1063/5.0065454
    DORA PSI