LNB Publications 2021 - 2024

Latychevskaia T
Criteria for objects suitable for reconstruction from holograms and diffraction patterns
Journal of the Optical Society of America A: Optics and Image Science, and Vision. 2024; 41(11): 2219-2230. https://doi.org/10.1364/JOSAA.534332
DORA PSI

Gupta R, Goswami Y, Yuan L, Roy B, Pereiro E, Shivashankar GV
Correlative light and soft X-ray tomography of in situ mesoscale heterochromatin structure in intact cells
Scientific Reports. 2024; 14: 27706 (14 pp.). https://doi.org/10.1038/s41598-024-77361-2
DORA PSI

Hurst V, Gerhold CB, Tarashev CVD, Challa K, Seeber A, Yamazaki S, et al.
Loss of cytoplasmic actin filaments raises nuclear actin levels to drive INO80C-dependent chromosome fragmentation
Nature Communications. 2024; 15: 9910 (22 pp.). https://doi.org/10.1038/s41467-024-54141-0
DORA PSI

Chen Y, Sun X, Tang Y, Tan Y, Guo C, Pan T, et al.
Pathogenic mutation ΔK280 promotes hydrophobic interactions involving microtubule-binding domain and enhances liquid-liquid phase separation of tau
Small. 2024: 2406429 (12 pp.). https://doi.org/10.1002/smll.202406429
DORA PSI

Lakshmaiah Narayana J, Mechesso AF, Rather IIG, Zarena D, Luo J, Xie J, et al.
Origami of KR-12 Designed Antimicrobial Peptides and Their Potential Applications
Antibiotics. 2024; 13(9): 816 (31 pp.). https://doi.org/10.3390/antibiotics13090816
DORA PSI

Hajibaba S, Tsujino S
Beam divergence and interference characteristics of field emission beam: effects of transverse momentum and source spatial coherence
In: 2024 37th international vacuum nanoelectronics conference (IVNC). IEEE; 2024:(2 pp.). https://doi.org/10.1109/IVNC63480.2024.10652397
DORA PSI

Thakkar P, Guzenko VA, Lu P, Dunin-Borkowski RE, Abahams JP, Tsujino S
Electrostatic interference control of a high-energy coherent electron beam using a three-element Boersch phase shifter
Japanese Journal of Applied Physics. 2024; 63(10): 104501 (7 pp.). https://doi.org/10.35848/1347-4065/ad7341
DORA PSI

Qi D, Shi X, Lin C, Holzhausen F, Ville L, Sun X, et al.
Self-adaptive synthesis of non-covalent crosslinkers while folding single-chain polymers
Angewandte Chemie International Edition. 2024; 63(38): e202408670 (9 pp.). https://doi.org/10.1002/anie.202408670
DORA PSI

Zheng Z, Own CS, Wanner AA, Koene RA, Hammerschmith EW, Silversmith WM, et al.
Fast imaging of millimeter-scale areas with beam deflection transmission electron microscopy
Nature Communications. 2024; 15(1): 6860 (11 pp.). https://doi.org/10.1038/s41467-024-50846-4
DORA PSI

Aidukas T, Phillips NW, Diaz A, Poghosyan E, Müller E, Levi AFJ, et al.
High-performance 4-nm-resolution X-ray tomography using burst ptychography
Nature. 2024; 632(8023): 81-88. https://doi.org/10.1038/s41586-024-07615-6
DORA PSI

Christen P, Jaussi R, Benoit R
Biochemie und Molekularbiologie. Eine Einführung in 40 Lerneinheiten
2nd ed. Berlin: Springer Nature; 2024. https://doi.org/10.1007/978-3-662-65477-4
DORA PSI

Wang J, Beyer D, Vaccarin C, He Y, Tanriver M, Benoit R, et al.
Development of radiofluorinated MLN-4760 derivatives for PET imaging of the SARS-CoV-2 entry receptor ACE2
European Journal of Nuclear Medicine and Molecular Imaging. 2024; 52: 9-21. https://doi.org/10.1007/s00259-024-06831-6
DORA PSI

Zimmermann N, Ishikawa T
Comparative structural study on axonemal and cytoplasmic dyneins
Cytoskeleton. 2024; 81(11): 681-690. https://doi.org/10.1002/cm.21897
DORA PSI

Asmara TC, Green RJ, Suter A, Wei Y, Zhang W, Knez D, et al.
Emergence of interfacial magnetism in strongly‐correlated nickelate‐titanate superlattices
Advanced Materials. 2024; 36(38): 2310668 (14 pp.). https://doi.org/10.1002/adma.202310668
DORA PSI

Cen T, Zhang Z, Torrent L, Müller E, Ludwig C, Testino A
Airborne metal nanoparticles released by azides detonation: determination and potential public exposure
Scientific Reports. 2024; 14(1): 17312 (11 pp.). https://doi.org/10.1038/s41598-024-67540-6
DORA PSI

Zhang X, Venkatachalapathy S, Paysan D, Schaerer P, Tripodo C, Uhler C, et al.
Unsupervised representation learning of chromatin images identifies changes in cell state and tissue organization in DCIS
Nature Communications. 2024; 15(1): 6112 (16 pp.). https://doi.org/10.1038/s41467-024-50285-1
DORA PSI

Straumann N, Combes BF, Dean Ben XL, Sternke-Hoffmann R, Gerez JA, Dias I, et al.
Visualizing alpha-synuclein and iron deposition in M83 mouse model of Parkinson's disease in vivo
Brain Pathology. 2024; 34(6): e13288 (14 pp.). https://doi.org/10.1111/bpa.13288
DORA PSI

Sternke-Hoffmann R, Sun X, Menzel A, Pinto MDS, Venclovaite U, Wördehoff M, et al.
Phase separation and aggregation of α-synuclein diverge at different salt conditions
Advanced Science. 2024; 11(34): 2308279 (15 pp.). https://doi.org/10.1002/advs.202308279
DORA PSI

Leppert A, Feng J, Railaite V, Bohn Pessatti T, Cerrato CP, Mörman C, et al.
Controlling drug partitioning in individual protein condensates through laser-induced microscale phase transitions
Journal of the American Chemical Society. 2024; 146(28): 19555-19565. https://doi.org/10.1021/jacs.4c06688
DORA PSI

Yuan S, Li S, Ruan J, Liu H, Jiang T, Dai H
Chronic kidney disease and pulmonary hypertension: progress in diagnosis and treatment
Translational Research. 2024; 273: 16-22. https://doi.org/10.1016/j.trsl.2024.06.003
DORA PSI

Latychevskaia T, Bandurin DA, Novoselov KS
A new family of septuple-layer 2D materials of MoSi₂N₄-like crystals
Nature Reviews Physics. 2024; 6: 426-438. https://doi.org/10.1038/s42254-024-00728-x
DORA PSI

Matinyan S, Filipcik P, van Genderen E, Abrahams JP
DiffraGAN: a conditional generative adversarial network for phasing single molecule diffraction data to atomic resolution
Frontiers in Molecular Biosciences. 2024; 11: 1386963 (11 pp.). https://doi.org/10.3389/fmolb.2024.1386963
DORA PSI

Wicki F, Latychevskaia T
Double-slit holography—a single-shot lensless imaging technique
Scientific Reports. 2024; 14: 12528 (9 pp.). https://doi.org/10.1038/s41598-024-62785-7
DORA PSI

Huang J, Clark AH, Hales N, Borca CN, Huthwelker T, Skoupy R, et al.
Spectroscopic investigations of complex electronic interactions by elemental doping and material compositing of cobalt oxide for enhanced oxygen evolution reaction activity
Advanced Functional Materials. 2024; 34(44): 2405384 (9 pp.). https://doi.org/10.1002/adfm.202405384
DORA PSI

Tsujino S, Sato Y, Jia S, Kepa MW, Trampari S, Tomizaki T
Inertial mixing of acoustically levitated droplets for time-lapse protein crystallography
Droplet. 2024; 3(3): e132 (11 PP.). https://doi.org/10.1002/dro2.132
DORA PSI

Mortelmans T, Marty B, Kazazis D, Padeste C, Li X, Ekinci Y
Three-dimensional microfluidic capillary device for rapid and multiplexed immunoassays in whole blood
ACS Sensors. 2024; 9(5): 2455-2464. https://doi.org/10.1021/acssensors.4c00153
DORA PSI

Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T
Chromatin remodeling due to transient-link-and-pass activity enhances subnuclear dynamics
Physical Review Letters. 2024; 132(5): 058401 (6 pp.). https://doi.org/10.1103/PhysRevLett.132.058401
DORA PSI

Cellini A, Shankar MK, Nimmrich A, Hunt LA, Monrroy L, Mutisya J, et al.
Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography
Nature Chemistry. 2024; 16: 624-632. https://doi.org/10.1038/s41557-023-01413-9
DORA PSI

Matinyan S, Filipcik P, Abrahams JP
Deep learning applications in protein crystallography
Acta Crystallographica Section A: Foundations and Advances. 2024; 80(1): 1-17. https://doi.org/10.1107/S2053273323009300
DORA PSI

Xie X, Barba Flores L, Bejar Haro B, Bergamaschi A, Fröjdh E, Müller E, et al.
Enhancing spatial resolution in MÖNCH for electron microscopy via deep learning
Journal of Instrumentation. 2024; 19(01): C01020 (11 pp.). https://doi.org/10.1088/1748-0221/19/01/C01020
DORA PSI

Wu J, Wang X, Lakkaraju A, Sternke-Hoffmann R, Qureshi BM, Aguzzi A, et al.
Channel activities of the full-length prion and truncated proteins
ACS Chemical Neuroscience. 2024; 15(1): 98-107. https://doi.org/10.1021/acschemneuro.3c00412
DORA PSI

Cerboni N, de Bodin-de Galembert G, De Gerone M, Gallucci G, Müller E, Nucciotti A, et al.
Development and implementation of holmium sources produced by molecular plating for the HOLMES experiment
Materials Chemistry and Physics. 2024; 314: 128837 (9 pp.). https://doi.org/10.1016/j.matchemphys.2023.128837
DORA PSI

Braunger JM, Cammarata LV, Sornapudi TR, Uhler C, Shivashankar GV
Transcriptional changes are tightly coupled to chromatin reorganization during cellular aging
Aging cell. 2024; 23(3): e14056 (18 pp.). https://doi.org/10.1111/acel.14056
DORA PSI

Roy B, Pekec T, Yuan L, Shivashankar GV
Implanting mechanically reprogrammed fibroblasts for aged tissue regeneration and wound healing
Aging cell. 2024; 23(2): e14032 (14 pp.). https://doi.org/10.1111/acel.14032
DORA PSI

Gingold T, Arias Vázquez A, Daniluk G, Serrano J, Włostowski T, Rizzi M
HydRA: a system-on-chip to run software in radiation-exposed areas
In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:217-221. https://doi.org/10.18429/JACoW-ICALEPCS2023-MO4AO02
DORA PSI

Claudio N, Nguyen M-T, Wanner A, Pucci F
Sequential chromogenic IHC: spatial analysis of lymph nodes identifies contact interactions between plasmacytoid dendritic cells and plasmablasts
Cancer Research Communications. 2023; 3(7): 1237-1247. https://doi.org/10.1158/2767-9764.CRC-23-0102
DORA PSI

Pauly T, Zhang T, Sternke-Hoffmann R, Nagel-Steger L, Willbold D
Differentiation of subnucleus-sized oligomers and nucleation-competent assemblies of the Aβ peptide
Biophysical Journal. 2023; 122(2): 269-278. https://doi.org/10.1016/j.bpj.2022.12.020
DORA PSI

Challa K, Paysan D, Leiser D, Sauder N, Weber DC, Shivashankar GV
Imaging and AI based chromatin biomarkers for diagnosis and therapy evaluation from liquid biopsies
npj Precision Oncology. 2023; 7: 135 (13 pp.). https://doi.org/10.1038/s41698-023-00484-8
DORA PSI

Wranik M, Kepa MW, Beale EV, James D, Bertrand Q, Weinert T, et al.
A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers
Nature Communications. 2023; 14(1): 7956 (12 pp.). https://doi.org/10.1038/s41467-023-43523-5
DORA PSI

Cvjetan N, Schuler LD, Ishikawa T, Walde P
Optimization and enhancement of the peroxidase-like activity of hemin in aqueous solutions of sodium dodecylsulfate
ACS Omega. 2023; 8(45): 42878-42899. https://doi.org/10.1021/acsomega.3c05915
DORA PSI

Pekeč T, Venkatachalapathy S, Shim AR, Paysan D, Grzmil M, Schibli R, et al.
Detecting radio- and chemoresistant cells in 3D cancer co-cultures using chromatin biomarkers
Scientific Reports. 2023; 13(1): 20662 (14 pp.). https://doi.org/10.1038/s41598-023-47287-2
DORA PSI

Matinyan S, Abrahams JP
TERSE/PROLIX (TRPX) - a new algorithm for fast and lossless compression and decompression of diffraction and cryo-EM data
Acta Crystallographica Section A: Foundations and Advances. 2023; 79(6): 536-541. https://doi.org/10.1107/S205327332300760X
DORA PSI

Shivashankar GV
Mechanical forces and the 3D genome
Current Opinion in Structural Biology. 2023; 83: 102728 (7 pp.). https://doi.org/10.1016/j.sbi.2023.102728
DORA PSI

Carrillo M, Mason TJ, Karpik A, Martiel I, Kepa MW, McAuley KE, et al.
Micro-structured polymer fixed targets for serial crystallography at synchrotrons and XFELs
IUCrJ. 2023; 10(6): 678-693. https://doi.org/10.1107/S2052252523007595
DORA PSI

Latychevskaia T
Controlling topological states in bilayer graphene
Nature Nanotechnology. 2023; 18: 1126-1127. https://doi.org/10.1038/s41565-023-01454-8
DORA PSI

Gomes CM, Hoyer W, Luo J
Editorial: The biochemistry of amyloids in neurodegenerative diseases, volume II
Frontiers in Neuroscience. 2023; 17: 1236518 (2 pp.). https://doi.org/10.3389/fnins.2023.1236518
DORA PSI

Latychevskaia T
Coherent imaging with low-energy electrons, quantitative analysis
Ultramicroscopy. 2023; 253: 113807 (10 pp.). https://doi.org/10.1016/j.ultramic.2023.113807
DORA PSI

Matinyan S, Demir B, Filipcik P, Abrahams JP, van Genderen E
Machine learning for classifying narrow-beam electron diffraction data
Acta Crystallographica Section A: Foundations and Advances. 2023; 79: 360-368. https://doi.org/10.1107/S2053273323004680
DORA PSI

Zimmermann N, Noga A, Obbineni JM, Ishikawa T
ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography
EMBO Journal. 2023; 42(12): e112466 (15 pp.). https://doi.org/10.15252/embj.2022112466
DORA PSI

Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, et al.
Deleterious mechanical deformation selects mechanoresilient cancer cells with enhanced proliferation and chemoresistance
Advanced Science. 2023; 10(22): 2201663 (15 pp.). https://doi.org/10.1002/advs.202201663
DORA PSI

Ishikawa T
Architecture of intraflagellar transport complexes
Nature Structural and Molecular Biology. 2023; 30(5): 570-573. https://doi.org/10.1038/s41594-023-00986-w
DORA PSI

Qin Y, Imobersteg S, Frank S, Blanc A, Chiorazzo T, Berger P, et al.
Signaling network response to α-particle–targeted therapy with the ²²⁵Ac-labeled minigastrin analog ²²⁵Ac-PP-F11N reveals the radiosensitizing potential of histone deacetylase inhibitors
Journal of Nuclear Medicine. 2023; 64(6): 873-879. https://doi.org/10.2967/jnumed.122.264597
DORA PSI

Liu C, Henning-Knechtel A, Österlund N, Wu J, Wang G, Gräslund RAO, et al.
Oligomer dynamics of LL-37 truncated fragments probed by α-hemolysin pore and molecular simulations
Small. 2023; 19(37): 2206232 (11 pp.). https://doi.org/10.1002/smll.202206232
DORA PSI

Liu C, Luo J
Protein oligomer engineering: a new frontier for studying protein structure, function, and toxicity
Angewandte Chemie International Edition. 2023; 62(23): e202216480 (12 pp.). https://doi.org/10.1002/anie.202216480
DORA PSI

Goswami Y, Sastry S
Kinetic reconstruction of free energies as a function of multiple order parameters
Journal of Chemical Physics. 2023; 158(14): 144502 (17 pp.). https://doi.org/10.1063/5.0144338
DORA PSI

Farnung J, Muhar M, Liang JR, Tolmachova KA, Benoit RM, Corn JE, et al.
Semisynthetic LC3 probes for autophagy pathways reveal a noncanonical LC3 interacting region motif crucial for the enzymatic activity of human ATG3
ACS Central Science. 2023; 9(5): 1025-1034. https://doi.org/10.1021/acscentsci.3c00009
DORA PSI

Moazeni M, Berger P, Padeste C
Polymer brush structures functionalized with molecular beacon for point-of-care diagnostics
Micro and Nano Engineering. 2023; 19: 100184 (9 pp.). https://doi.org/10.1016/j.mne.2023.100184
DORA PSI

França LVS, Müller E, Yukihara EG, Baffa O
A Tb and Ag co-doped borate compound forms a high sensitive X-ray, gamma-ray and neutron luminescence dosimeter
Journal of Materials Chemistry C. 2023; 11(13): 4444-4455. https://doi.org/10.1039/d3tc00223c
DORA PSI

Ukleev V, Burian M, Gliga S, Vaz CAF, Rösner B, Fainozzi D, et al.
Effect of intense x-ray free-electron laser transient gratings on the magnetic domain structure of Tm:YIG
Journal of Applied Physics. 2023; 133(12): 123902 (6 pp.). https://doi.org/10.1063/5.0119241
DORA PSI

De Angelis S, Schuler T, Sabharwal M, Holler M, Guizar-Sicairos M, Müller E, et al.
Understanding the microstructure of a core-shell anode catalyst layer for polymer electrolyte water electrolysis
Scientific Reports. 2023; 13(1): 4280 (11 pp.). https://doi.org/10.1038/s41598-023-30960-x
DORA PSI

Mustafi S, Latychevskaia T
Fourier transform holography: a lensless imaging technique, its principles and applications
Photonics. 2023; 10(2): 153 (28 pp.). https://doi.org/10.3390/photonics10020153
DORA PSI

Wu J, Yamashita T, Hamilton AD, Thompson S, Luo J
Single-molecule nanopore dielectrophoretic trapping of α-synuclein with lipid membranes
Cell Reports Physical Science. 2023; 4(2): 101243 (13 pp.). https://doi.org/10.1016/j.xcrp.2022.101243
DORA PSI

Wranik M, Weinert T, Slavov C, Masini T, Furrer A, Gaillard N, et al.
Watching the release of a photopharmacological drug from tubulin using time-resolved serial crystallography
Nature Communications. 2023; 14(1): 903 (12 pp.). https://doi.org/10.1038/s41467-023-36481-5
DORA PSI

Behbahanipour M, Benoit R, Navarro S, Ventura S
OligoBinders: bioengineered soluble amyloid-like nanoparticles to bind and neutralize SARS-CoV-2
ACS Applied Materials and Interfaces. 2023; 15(9): 11444-11457. https://doi.org/10.1021/acsami.2c18305
DORA PSI

Loch RA, Wang H, Perálvarez-Marín A, Berger P, Nielsen H, Chroni A, et al.
Cross interactions between Apolipoprotein E and amyloid proteins in neurodegenerative diseases
Computational and Structural Biotechnology Journal. 2023; 21: 1189-1204. https://doi.org/10.1016/j.csbj.2023.01.022
DORA PSI

Sternke-Hoffmann R, Pauly T, Norrild RK, Hansen J, Tucholski F, Høie MH, et al.
Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains
BMC Biology. 2023; 21: 21 (25 pp.). https://doi.org/10.1186/s12915-022-01506-w
DORA PSI

Lacey SD, Gilardi E, Müller E, Merckling C, Saint-Girons G, Botella C, et al.
Integration of Li₄Ti₅O₁₂ crystalline films on silicon toward high-rate performance lithionic devices
ACS Applied Materials and Interfaces. 2023; 15(1): 1535-1544. https://doi.org/10.1021/acsami.2c17073
DORA PSI

Ishikawa T
Mass-spec, cryo-EM and AI join forces for a close look at the transporter complex in cilia
EMBO Journal. 2023; 42: e113010 (3 pp.). https://doi.org/10.15252/embj.2022113010
DORA PSI

Beck A, Kazazis D, Ekinci Y, Li X, Müller Gubler EA, Kleibert A, et al.
The extent of platinum-induced hydrogen spillover on cerium dioxide
ACS Nano. 2023; 17(2): 1091-1099. https://doi.org/10.1021/acsnano.2c08152
DORA PSI

Latychevskaia T, Woods CR, Wang YB, Holwill M, Prestat E, Mustafi S, et al.
Potentials of individual atoms by convergent beam electron diffraction
Carbon. 2023; 201: 244-250. https://doi.org/10.1016/j.carbon.2022.09.003
DORA PSI

Ströh S, Hammerschmith EW, Tank DW, Seung HS, Wanner AA
In situ X-ray-assisted electron microscopy staining for large biological samples
eLife. 2022; 11: e72147 (19 pp.). https://doi.org/10.7554/eLife.72147
DORA PSI

Neumann C, Focht D, Trampari S, Lyons JA, Nissen P
Variations on a theme: crystal forms of the amino-acid transporter MhsT
Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 2022; 78: 297-305. https://doi.org/10.1107/S2053230X22007154
DORA PSI

Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T
How enzymatic activity is involved in chromatin organization
eLife. 2022; 11: e79901 (18 pp.). https://doi.org/10.7554/eLife.79901
DORA PSI

Jia S, Sato Y, Tsujino S
Size and shape dependent rotation characteristics of thin film ultrasonic rotors
Applied Physics Letters. 2022; 121(25): 254102 (6 pp.). https://doi.org/10.1063/5.0126000
DORA PSI

Jia S, Sato Y, Lim RYH, Tsujino S
Rotation characteristics of acoustically actuated thin-film rotors in air and water
In: IUS 2022. Symposium proceedings. IEEE international ultrasonics symposium. Piscataway: IEEE; 2022:(2 pp.). https://doi.org/10.1109/IUS54386.2022.9958207
DORA PSI

Wang H, Wu J, Sternke-Hoffmann R, Zheng W, Mörman C, Luo J
Multivariate effects of pH, salt, and Zn²⁺ ions on Aβ₄₀ fibrillation
Communications Chemistry. 2022; 5(1): 171 (12 pp.). https://doi.org/10.1038/s42004-022-00786-1
DORA PSI

Zhang X, Wang X, Shivashankar GV, Uhler C
Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease
Nature Communications. 2022; 13(1): 7480 (17 pp.). https://doi.org/10.1038/s41467-022-35233-1
DORA PSI

Varol R, Karavelioglu Z, Omeroglu S, Aydemir G, Karadag A, Meco HE, et al.
Acousto-holographic reconstruction of whole-cell stiffness maps
Nature Communications. 2022; 13(1): 7351 (10 pp.). https://doi.org/10.1038/s41467-022-35075-x
DORA PSI

Svara F, Förster D, Kubo F, Januszewski M, dal Maschio M, Schubert PJ, et al.
Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain
Nature Methods. 2022; 19: 1357-1366. https://doi.org/10.1038/s41592-022-01621-0
DORA PSI

Yuan L, Roy B, Ratna P, Uhler C, Shivashankar GV
Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions
Scientific Reports. 2022; 12(1): 17318 (13 pp.). https://doi.org/10.1038/s41598-022-21596-4
DORA PSI

Wu Q, Soppa K, Müller E, Müller J, Odstrcil M, Tsai EHR, et al.
A modern look at a medieval bilayer metal leaf: nanotomography of Zwischgold
Nanoscale. 2022; 14(40): 15165-15180. https://doi.org/10.1039/D2NR03367D
DORA PSI

Venkatachalapathy S, Sreekumar D, Ratna P, Shivashankar GV
Actomyosin contractility as a mechanical checkpoint for cell state transitions
Scientific Reports. 2022; 12(1): 16063 (13 pp.). https://doi.org/10.1038/s41598-022-20089-8
DORA PSI

Wu J, Österlund N, Wang H, Sternke-Hoffmann R, Pupart H, Ilag LL, et al.
Identifying the role of co-aggregation of Alzheimer's amyloid-β with amorphous protein aggregates of non-amyloid proteins
Cell Reports Physical Science. 2022; 3(9): 101028 (22 pp.). https://doi.org/10.1016/j.xcrp.2022.101028
DORA PSI

Noga A, Horii M, Goto Y, Toyooka K, Ishikawa T, Hirono M
Bld10p/Cep135 determines the number of triplets in the centriole independently of the cartwheel
EMBO Journal. 2022; 41(20): e104582 (14 pp.). https://doi.org/10.15252/embj.2020104582
DORA PSI

Holler M, Aidukas T, Heller L, Appel C, Phillips NW, Müller-Gubler E, et al.
Environmental control for X-ray nanotomography
Journal of Synchrotron Radiation. 2022; 29: 1223-1231. https://doi.org/10.1107/S1600577522006968
DORA PSI

Fatton M, Filippidou S, Junier T, Cailleau G, Berge M, Poppleton D, et al.
Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes
Environmental Microbiology. 2022; 24(12): 6320-6335. https://doi.org/10.1111/1462-2920.16145
DORA PSI

Mohammed I, Schmitz KA, Schenck N, Balasopoulos D, Topitsch A, Maier T, et al.
Catalytic cycling of human mitochondrial Lon protease
Structure. 2022; 30(9): 1254-1268. https://doi.org/10.1016/j.str.2022.06.006
DORA PSI

Zeng Y, Zhuang Y, Vinod B, Guo X, Mitra A, Chen P, et al.
Guiding irregular nuclear morphology on nanopillar arrays for malignancy differentiation in tumor cells
Nano Letters. 2022; 22(18): 7724-7733. https://doi.org/10.1021/acs.nanolett.2c01849
DORA PSI

Heydenreich FM, Plouffe B, Rizk A, Milić D, Zhou J, Breton B, et al.
Michaelis-Menten quantification of ligand signaling bias applied to the promiscuous vasopressin V2 receptor
Molecular Pharmacology. 2022; 102(3): 139-149. https://doi.org/10.1124/molpharm.122.000497
DORA PSI

de la Roche NM, Mühlethaler T, Di Martino RMC, Ortega JA, Gioia D, Roy B, et al.
Novel fragment-derived colchicine-site binders as microtubule-destabilizing agents
European Journal of Medicinal Chemistry. 2022; 241: 114614 (12 pp.). https://doi.org/10.1016/j.ejmech.2022.114614
DORA PSI

Wang H, Mörman C, Sternke-Hoffmann R, Huang CY, Prota A, Ma P, et al.
Cu²⁺ ions modulate the interaction between α-synuclein and lipid membranes
Journal of Inorganic Biochemistry. 2022; 236: 111945 (10 pp.). https://doi.org/10.1016/j.jinorgbio.2022.111945
DORA PSI

Smirnova J, Gavrilova J, Noormägi A, Valmsen K, Pupart H, Luo J, et al.
Evaluation of Zn²⁺- and Cu²⁺-binding affinities of native Cu,Zn-SOD1 and its G93A mutant by LC-ICP MS
Molecules. 2022; 27(10): 3160 (11 pp.). https://doi.org/10.3390/molecules27103160
DORA PSI

Latychevskaia T, Huang P, Novoselov KS
Imaging defects in two-dimensional crystals by convergent-beam electron diffraction
Physical Review B. 2022; 105(18): 184113 (7 pp.). https://doi.org/10.1103/PhysRevB.105.184113
DORA PSI

Latychevskaia T, Kohli A
Low-dose shift- and rotation-invariant diffraction recognition imaging
Scientific Reports. 2022; 12(1): 11202 (9 pp.). https://doi.org/10.1038/s41598-022-15486-y
DORA PSI

Biswas B, Michel VF, Fjellvåg ØS, Bimashofer G, Döbeli M, Jambor M, et al.
Role of dy on the magnetic properties of orthorhombic DyFeO₃
Physical Review Materials. 2022; 6(7): 074401 (9 pp.). https://doi.org/10.1103/PhysRevMaterials.6.074401
DORA PSI

Uhler C, Shivashankar GV
Machine learning approaches to single-cell data integration and translation
Proceedings of the IEEE. 2022; 110(5): 557-576. https://doi.org/10.1109/JPROC.2022.3166132
DORA PSI

Mühlethaler T, Milanos L, Ortega JA, Blum TB, Gioia D, Roy B, et al.
Rational design of a novel tubulin inhibitor with a unique mechanism of action
Angewandte Chemie International Edition. 2022; 61(25): e202204052 (11 pp.). https://doi.org/10.1002/anie.202204052
DORA PSI

Zhang Q, Liu Y, Wu J, Zeng L, Wei J, Fu S, et al.
Structure and mechanism behind the inhibitory effect of water soluble metalloporphyrins on Aβ_1-42 aggregation
Inorganic Chemistry Frontiers. 2022; 9(7): 1520-1532. https://doi.org/10.1039/d1qi01434j
DORA PSI

Bavinton CE, Sternke-Hoffmann R, Yamashita T, Knipe PC, Hamilton AD, Luo J, et al.
Rationally designed helical peptidomimetics disrupt α-synuclein fibrillation
Chemical Communications. 2022; 58(33): 5132-5135. https://doi.org/10.1039/d2cc00212d
DORA PSI

Kepa MW, Tomizaki T, Sato Y, Ozerov D, Sekiguchi H, Yasuda N, et al.
Acoustic levitation and rotation of thin films and their application for room temperature protein crystallography
Scientific Reports. 2022; 12: 5349 (14 pp.). https://doi.org/10.1038/s41598-022-09167-z
DORA PSI

Tsujino S
On the brightness, transverse emittance, and transverse coherence of field emission beam
Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 2022; 40(3): 030801 (12 pp.). https://doi.org/10.1116/6.0001776
DORA PSI

Fröjdh E, Abrahams JP, Andrä M, Barten R, Bergamaschi A, Brückner M, et al.
Electron detection with CdTe and GaAs sensors using the charge integrating hybrid pixel detector JUNGFRAU
Journal of Instrumentation. 2022; 17: C01020 (12 pp.). https://doi.org/10.1088/1748-0221/17/01/C01020
DORA PSI

Alpert PA, Boucly A, Yang S, Yang H, Kilchhofer K, Luo Z, et al.
Ice nucleation imaged with X-ray spectro-microscopy
Environmental Science: Atmospheres. 2022; 2(3): 335-351. https://doi.org/10.1039/D1EA00077B
DORA PSI

Mortelmans T, Kazazis D, Padeste C, Berger P, Li X, Ekinci Y
Poly(methyl methacrylate)-based nanofluidic device for rapid and multiplexed serological antibody detection of SARS-CoV-2
ACS Applied Nano Materials. 2022; 5(1): 517-526. https://doi.org/10.1021/acsanm.1c03309
DORA PSI

Collu G, Bierig T, Krebs A-S, Engilberge S, Varma N, Guixà-González R, et al.
Chimeric single α-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology
Structure. 2022; 30(1): 95-106. https://doi.org/10.1016/j.str.2021.09.002
DORA PSI

Challa K, Seebacher J, Gasser SM
Sucrose gradient chromatin enrichment for quantitative proteomics analysis in budding yeast
STAR Protocols. 2021; 2(4): 100825 (16 pp.). https://doi.org/10.1016/j.xpro.2021.100825
DORA PSI

Latychevskaia T, Haigh SJ, Novoselov KS
Holographic convergent electron beam diffraction (CBED) imaging of two-dimensional crystals
In: Novoselov KS, Wee ATS, Arramel, eds. Molecular interactions on two-dimensional materials. Singapore: World Scientific Publishing Company; 2021:303-331. https://doi.org/10.1142/9789811247859_0009
DORA PSI

Zhang L, Müller Gubler EA, Tai C-W, Kondracki Ł, Sommer H, Novák P, et al.
Elucidating the humidity-induced degradation of Ni-Rich layered cathodes for Li-ion batteries
ACS Applied Materials and Interfaces. 2021; 14(11): 13240-13249. https://doi.org/10.1021/acsami.1c23128
DORA PSI

Thakkar P, Guzenko VA, Lu P-H, Dunin-Borkowski RE, Abrahams JP, Tsujino S
Voltage-controlled three-electron-beam interference by a three-element Boersch phase shifter with top and bottom shielding electrodes
In: Purcell S, Mazellier J-P, eds. 2021 34th international vacuum nanoelectronics conference (IVNC). International conference on vacuum nanoelectronics (IVNC). sine loco: IEEE; 2021:21299961 (2 pp.). https://doi.org/10.1109/IVNC52431.2021.9600711
DORA PSI

Kepa MW, Tomizaki T, Tsujino S
Development of on-demand sample loading of ultrasound acoustic levitators by focused acoustic radiation
In: IEEE international ultrasonics symposium (IUS 2021). Danvers, MA: IEEE; 2021:(3 pp.). https://doi.org/10.1109/IUS52206.2021.9593735
DORA PSI

Gomes CM, Hoyer W, Luo J
Editorial: the biochemistry of amyloids in neurodegenerative diseases, volume I
Frontiers in Neuroscience. 2021; 15: 819481 (2 pp.). https://doi.org/10.3389/fnins.2021.819481
DORA PSI

Romantini N, Alam S, Dobitz S, Spillmann M, De Foresta M, Schibli R, et al.
Exploring the signaling space of a GPCR using bivalent ligands with a rigid oligoproline backbone
Proceedings of the National Academy of Sciences of the United States of America PNAS. 2021; 118(48): e2108776118 (8 pp.). https://doi.org/10.1073/pnas.2108776118
DORA PSI

Latychevskaia T, Cassidy C, Shintake T
Bragg holography of nano-crystals
Ultramicroscopy. 2021; 230: 113376 (8 pp.). https://doi.org/10.1016/j.ultramic.2021.113376
DORA PSI

Venkatachalapathy S, Jokhun DS, Andhari M, Shivashankar GV
Single cell imaging-based chromatin biomarkers for tumor progression
Scientific Reports. 2021; 11(1): 23041 (14 pp.). https://doi.org/10.1038/s41598-021-02441-6
DORA PSI

Luo J, Wang H, Wu J, Romankov V, Daffé N, Dreiser J
Amyloid-beta–copper interaction studied by simultaneous nitrogen K and copper L_2,3-edge soft X-ray absorption spectroscopy
iScience. 2021; 24(12): 103465 (11 pp.). https://doi.org/10.1016/j.isci.2021.103465
DORA PSI

Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, et al.
Whole-body integration of gene expression and single-cell morphology
Cell. 2021; 184(18): 4819-4837. https://doi.org/10.1016/j.cell.2021.07.017
DORA PSI

Prasada Rao HBD, Sato T, Challa K, Fujita Y, Shinohara M, Shinohara A
Phosphorylation of luminal region of the SUN-domain protein Mps3 promotes nuclear envelope localization during meiosis
eLife. 2021; 10: e63119 (29 pp.). https://doi.org/10.7554/eLife.63119
DORA PSI

Cvjetinović Đ, Janković D, Milanović Z, Mirković M, Petrović J, Prijović Ž, et al.
¹⁷⁷Lu–labeled micro liposomes as a potential radiosynoviorthesis therapeutic agent
International Journal of Pharmaceutics. 2021; 608: 121106 (10 pp.). https://doi.org/10.1016/j.ijpharm.2021.121106
DORA PSI

Tran HT, Lucas MS, Ishikawa T, Shahmoradian SH, Padeste C
A compartmentalized neuronal cell-culture platform compatible with cryo-fixation by high-pressure freezing for ultrastructural imaging
Frontiers in Neuroscience. 2021; 15: 726763 (15 pp.). https://doi.org/10.3389/fnins.2021.726763
DORA PSI

Panneels V, Diaz A, Imsand C, Guizar-Sicairos M, Müller E, Bittermann AG, et al.
Imaging of retina cellular and subcellular structures using ptychographic hard X-ray tomography
Journal of Cell Science. 2021; 134(19): jcs258561 (8 pp.). https://doi.org/10.1242/jcs.258561
DORA PSI

Wu J, Blum TB, Farrell DP, DiMaio F, Abrahams JP, Luo J
Cryo-electron microscopy imaging of Alzheimer's amyloid-beta 42 oligomer displayed on a functionally and structurally relevant scaffold
Angewandte Chemie International Edition. 2021; 60(34): 18680-18687. https://doi.org/10.1002/anie.202104497
DORA PSI

Martiel I, Beale JH, Karpik A, Huang C-Y, Vera L, Olieric N, et al.
Versatile microporous polymer-based supports for serial macromolecular crystallography
Acta Crystallographica Section D: Structural Biology. 2021; 77(9): 1153-1167. https://doi.org/10.1107/S2059798321007324
DORA PSI

Latychevskaia T
Three-dimensional structure from single two-dimensional diffraction intensity measurement
Physical Review Letters. 2021; 127(6): 063601 (6 pp.). https://doi.org/10.1103/PhysRevLett.127.063601
DORA PSI

Galaz-Montoya JG, Shahmoradian SH, Shen K, Frydman J, Chiu W
Cryo-electron tomography provides topological insights into mutant huntingtin exon 1 and polyQ aggregates
Communications Biology. 2021; 4(1): 849 (9 pp.). https://doi.org/10.1038/s42003-021-02360-2
DORA PSI

Latychevskaia T, Zan R, Morozov S, Novoselov KS
Symmetry of diffraction patterns of two-dimensional crystal structures
Ultramicroscopy. 2021; 228: 113336 (5 pp.). https://doi.org/10.1016/j.ultramic.2021.113336
DORA PSI

Latychevskaia T
Phase retrieval methods applied to coherent imaging
In: Hÿtch M, Hawkes PW, eds. Advances in imaging and electron physics. sine loco: Elsevier; 2021:1-62. https://doi.org/10.1016/bs.aiep.2021.04.001
DORA PSI

Yamamoto R, Hwang J, Ishikawa T, Kon T, Sale WS
Composition and function of ciliary inner-dynein-arm subunits studied in Chlamydomonas reinhardtii
Cytoskeleton. 2021; 78(3): 77-96. https://doi.org/10.1002/cm.21662
DORA PSI

Latychevskaia T
Wavefront modulation and beam shaping into arbitrary three-dimensional intensity distributions
Photonics. 2021; 8(6): 179 (10 pp.). https://doi.org/10.3390/photonics8060179
DORA PSI

Marelli E, Gazquez J, Poghosyan E, Müller E, Gawryluk DJ, Pomjakushina E, et al.
Correlation between oxygen vacancies and oxygen evolution reaction activity for a model electrode: PrBaCo₂O_5+δ
Angewandte Chemie International Edition. 2021; 60(26): 14609-14619. https://doi.org/10.1002/anie.202103151
DORA PSI

Blum TB, Housset D, Clabbers MTB, van Genderen E, Bacia-Verloop M, Zander U, et al.
Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals
Acta Crystallographica Section D: Structural Biology. 2021; 77: 75-85. https://doi.org/10.1107/S2059798320014540
DORA PSI

Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, et al.
A dynein-associated photoreceptor protein prevents ciliary acclimation to blue light
Science Advances. 2021; 7(9): eabf3621 (12 pp.). https://doi.org/10.1126/sciadv.abf3621
DORA PSI

De Leo MG, Berger P, Mayer A
WIPI1 promotes fission of endosomal transport carriers and formation of autophagosomes through distinct mechanisms
Autophagy. 2021; 17(11): 3644-3670. https://doi.org/10.1080/15548627.2021.1886830
DORA PSI

Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, Mohammad-Rafiee F
The characteristics of nuclear membrane fluctuations in stem cells
Journal of the Royal Society Interface. 2021; 18(176): 20201010 (9 pp.). https://doi.org/10.1098/rsif.2020.1010
DORA PSI

Latychevskaia T, Haigh SJ, Novoselov KS
Holographic convergent electron beam diffraction (CBED) imaging of two-dimensional crystals
Surface Review and Letters. 2021; 28(8): 2140001 (15 pp.). https://doi.org/10.1142/S0218625X21400011
DORA PSI

Xiao X, Willemse J, Voskamp P, Li X, Prota AE, Lamers M, et al.
Ectopic positioning of the cell division plane is associated with single amino acid substitutions in the FtsZ-recruiting SsgB in Streptomyces
Open Biology. 2021; 11(2): 200409 (14 pp.). https://doi.org/10.1098/rsob.200409
DORA PSI

Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, et al.
Multi-domain translation between single-cell imaging and sequencing data using autoencoders
Nature Communications. 2021; 12(1): 31 (10 pp.). https://doi.org/10.1038/s41467-020-20249-2
DORA PSI

Belyaeva A, Cammarata L, Radhakrishnan A, Squires C, Yang KD, Shivashankar GV, et al.
Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing
Nature Communications. 2021; 12(1): 1024 (13 pp.). https://doi.org/10.1038/s41467-021-21056-z
DORA PSI

Nitzsche A, Pietilä R, Love DT, Testini C, Ninchoji T, Smith RO, et al.
Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis
EMBO Reports. 2021; 22(2): e5021 (16 pp.). https://doi.org/10.15252/embr.202050218
DORA PSI

Wu J, Yin X, Ye H, Gao Z, Li H
Structure relationship of metalloporphyrins in inhibiting the aggregation of hIAPP
International Journal of Biological Macromolecules. 2021; 167: 141-150. https://doi.org/10.1016/j.ijbiomac.2020.11.161
DORA PSI

Uhler C, Shivashankar GV
Mechanogenomic coupling of lung tissue stiffness, EMT and coronavirus pathogenicity
Current Opinion in Solid State and Materials Science. 2021; 25(1): 100874 (4 pp.). https://doi.org/10.1016/j.cossms.2020.100874
DORA PSI

Wang H, Lallemang M, Hermann B, Wallin C, Loch R, Blanc A, et al.
ATP impedes the inhibitory effect of Hsp90 on Aβ₄₀ fibrillation
Journal of Molecular Biology. 2021; 433(2): 166717 (16 pp.). https://doi.org/10.1016/j.jmb.2020.11.016
DORA PSI